Rybenkov, Valentin V: search on Z-Library

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1

Extending topological surgery to natural processes and dynamical systems

Antoniou, Stathis, Lambropoulou, Sofia, Rybenkov, Valentin V

Journal:

Year:

2017

Language:

english

File:

PDF, 12.73 MB

english, 2017

2

Towards the architecture of the chromosomal architects

Rybenkov, Valentin V

Journal:

Nature Structural and Molecular Biology

Year:

2009

Language:

english

File:

PDF, 162 KB

english, 2009

3

13S Condensin Actively Reconfigures DNA by Introducing Global Positive Writhe: Implications for Chromosome Condensation

Keiji Kimura, Valentin V Rybenkov, Nancy J Crisona, Tatsuya Hirano, Nicholas R Cozzarelli

Journal:

Year:

1999

Language:

english

File:

PDF, 269 KB

english, 1999

4

Interplay of Protein and DNA Structure Revealed in Simulations of the lac Operon

Czapla, Luke, Grosner, Michael A., Swigon, David, Olson, Wilma K., Rybenkov, Valentin V.

Journal:

Year:

2013

Language:

english

File:

PDF, 2.04 MB

english, 2013

5

Inhibition of Zn(II) Binding Type IA Topoisomerases by Organomercury Compounds and Hg(II)

Cheng, Bokun, Annamalai, Thirunavukkarasu, Sandhaus, Shayna, Bansod, Priyanka, Tse-Dinh, Yuk-Ching, Rybenkov, Valentin V

Journal:

Year:

2015

Language:

english

File:

PDF, 3.32 MB

english, 2015

6

Segregation but Not Replication of the Pseudomonas aeruginosa Chromosome Terminates at Dif

Bhowmik, Bijit K., Clevenger, April L., Zhao, Hang, Rybenkov, Valentin V., Brennan, Richard Gerald

Journal:

Year:

2018

Language:

english

File:

PDF, 861 KB

english, 2018

7

DNA segregation under Par protein control

Jindal, Lavisha, Emberly, Eldon, Rybenkov, Valentin V

Journal:

Year:

2019

Language:

english

File:

PDF, 2.38 MB

english, 2019

8

MukB acts as a macromolecular clamp in DNA condensation

Cui, Yuanbo, Petrushenko, Zoya M, Rybenkov, Valentin V

Journal:

Nature Structural and Molecular Biology

Year:

2008

Language:

english

File:

PDF, 665 KB

english, 2008

9

The effect of ionic conditions on the conformations of supercoiled DNA. I. sedimentation analysis

Valentin V. Rybenkov, Alexander V. Vologodskii, Nicholas R. Cozzarelli

Journal:

Journal of Molecular Biology

Year:

1997

Language:

english

File:

PDF, 389 KB

english, 1997

10

Prodigiosin - A Multifaceted Escherichia coli Antimicrobial Agent

Danevčič, Tjaša, Borić Vezjak, Maja, Zorec, Maša, Stopar, David, Rybenkov, Valentin V

Journal:

Year:

2016

Language:

english

File:

PDF, 2.28 MB

english, 2016

11

A Guide to Magnetic Tweezers and Their Applications

Sarkar, Rupa, Rybenkov, Valentin V.

Journal:

Frontiers in Physics

Year:

2016

Language:

english

File:

PDF, 3.14 MB

english, 2016

12

The effect of ionic conditions on the conformations of supercoiled DNA. II. equilibrium catenation

Valentin V Rybenkov, Alexander V Vologodskii, Nicholas R Cozzarelli

Journal:

Journal of Molecular Biology

Year:

1997

Language:

english

File:

PDF, 587 KB

english, 1997

13

Breaking the permeability barrier of Escherichia coli by controlled hyperporination of the outer membrane.

Krishnamoorthy, Ganesh, Wolloscheck, David, Weeks, Jon W., Croft, Cameron, Rybenkov, Valentin V., Zgurskaya, Helen I.

Journal:

Antimicrobial Agents and Chemotherapy

Year:

2016

Language:

english

File:

PDF, 1.59 MB

english, 2016

14

Pseudomonas aeruginosa condensins support opposite differentiation states

Zhao, Hang, Clevenger, April, Ritchey, Jerry W., Zgurskaya, Helen I., Rybenkov, Valentin V.

Journal:

Journal of Bacteriology

Year:

2016

File:

PDF, 741 KB

2016

15

Reviving antibiotics: efflux pump inhibitors that interact with AcrA, a membrane fusion protein of the AcrAB-TolC multidrug efflux pump

Abdali, Narges, Parks, Jerry Matthew, Haynes, Keith, Chaney, Julie L., Green, Adam T., Wolloscheck, David, Walker, John K, Rybenkov, Valentin V., Baudry, Jerome Yves, Smith, Jeremy C., Zgurskaya, Hele

Journal:

ACS Infectious Diseases

Year:

2016

Language:

english

File:

PDF, 2.31 MB

english, 2016

16

Topoisomerase 2 Is Dispensable for the Replication and Segregation of Small Yeast Artificial Chromosomes (YACs)

Cebrián, Jorge, Monturus, Estefanía, Martínez-Robles, María-Luisa, Hernández, Pablo, Krimer, Dora B., Schvartzman, Jorge B., Rybenkov, Valentin V.

Journal:

Year:

2014

Language:

english

File:

PDF, 4.97 MB

english, 2014

17

Kinetic Partitioning Modulates Human Telomere DNA G-Quadruplex Structural Polymorphism

Long, Xi, Stone, Michael D., Rybenkov, Valentin V

Journal:

Year:

2013

Language:

english

File:

PDF, 1.23 MB

english, 2013

18

A New Cationic Porphyrin Derivative (TMPipEOPP) with Large Side Arm Substituents: A Highly Selective G-Quadruplex Optical Probe

Zhu, Li-Na, Zhao, Shu-Juan, Wu, Bin, Li, Xiao-Zeng, Kong, De-Ming, Rybenkov, Valentin V.

Journal:

Year:

2012

Language:

english

File:

PDF, 1.04 MB

english, 2012

19

Spatial Positioning of All 24 Chromosomes in the Lymphocytes of Six Subjects: Evidence of Reproducible Positioning and Spatial Repositioning following DNA Damage with Hydrogen Peroxide and Ultraviolet B

Ioannou, Dimitrios, Kandukuri, Lakshmi, Quadri, Ameer, Becerra, Victor, Simpson, Joe Leigh, Tempest, Helen G., Rybenkov, Valentin V

Journal:

Year:

2015

Language:

english

File:

PDF, 1.80 MB

english, 2015

20

Bifurcation kinetics of drug uptake by Gram-negative bacteria

Westfall, David A., Krishnamoorthy, Ganesh, Wolloscheck, David, Sarkar, Rupa, Zgurskaya, Helen I., Rybenkov, Valentin V., Shafer, William M.

Journal:

Year:

2017

Language:

english

File:

PDF, 2.07 MB

english, 2017

21

(C2G4)n repeat expansion sequences from the C9orf72 gene form an unusual DNA higher-order structure in the pH range of 5-6

Lat, Prince Kumar, Sen, Dipankar, Rybenkov, Valentin V.

Journal:

Year:

2018

Language:

english

File:

PDF, 10.36 MB

english, 2018

22

Small Molecule Condensin Inhibitors

Zhao, Hang, Petrushenko, Zoya M., Walker, John K., Baudry, Jerome, Zgurskaya, Helen I., Rybenkov, Valentin V.

Journal:

ACS Infectious Diseases

Year:

2018

Language:

english

File:

PDF, 2.80 MB

english, 2018

23

Drug permeation against efflux by two transporters

Saha, Paramita, Sikdar, Samapan, Krishnamoorthy, Ganesh, Zgurskaya, Helen I., Rybenkov, Valentin V.

Journal:

ACS Infectious Diseases

Year:

2020

Language:

english

File:

PDF, 3.01 MB

english, 2020

24

Addressing the role of centromere sites in activation of ParB proteins for partition complex assembly

Audibert, Sylvain, Tanguy-le-Gac, Nicolas, Rech, JÃ©rÃ´me, Turlan, Catherine, Bouet, Jean-Yves, Bystricky, Kerstin, Lane, David, Rybenkov, Valentin V.

Journal:

Year:

2020

File:

PDF, 2.39 MB

2020

25

A new family of bacterial condensins

Zoya M. Petrushenko, Weifeng She, Valentin V. Rybenkov

Journal:

Molecular Microbiology

Year:

2011

Language:

english

File:

PDF, 1.12 MB

english, 2011

26

Trans-envelope multidrug efflux pumps of Gram-negative bacteria and their synergism with the outer membrane barrier

Zgurskaya, Helen I., Rybenkov, Valentin V., Krishnamoorthy, Ganesh, Leus, Inga V.

Journal:

Research in Microbiology

Year:

2018

Language:

english

File:

PDF, 487 KB

english, 2018

27

Molecular Properties That Define the Activities of Antibiotics in Escherichia coli and Pseudomonas aeruginosa

Cooper, Sarah J., Krishnamoorthy, Ganesh, Wolloscheck, David, Walker, John K., Rybenkov, Valentin V., Parks, Jerry M., Zgurskaya, Helen I.

Journal:

ACS Infectious Diseases

Year:

2018

Language:

english

File:

PDF, 1.92 MB

english, 2018

28

Maintenance of chromosome structure in Pseudomonas aeruginosa

Rybenkov, Valentin V.

Journal:

FEMS Microbiology Letters

Year:

2014

Language:

english

File:

PDF, 424 KB

english, 2014

29

Novobiocin susceptibility of MukBEF deficient Escherichia coli is combinatorial with efflux and resides in DNA topoisomerases

Petrushenko, Zoya M., Zhao, Hang, Zgurskaya, Helen I., Rybenkov, Valentin V.

Journal:

Antimicrobial Agents and Chemotherapy

Year:

2016

Language:

english

File:

PDF, 854 KB

english, 2016

30

Probability of DNA Knotting and the Effective Diameter of the DNA Double Helix

Valentin V. Rybenkov, Nicholas R. Cozzarelli and Alexander V. Vologodskii

Journal:

Proceedings of the National Academy of Sciences

Year:

1993

Language:

english

File:

PDF, 964 KB

english, 1993

31

When Maxwellian demon meets action at a distance

Rybenkov, Valentin V.

Journal:

Physics of Life Reviews

Year:

2016

Language:

english

File:

PDF, 267 KB

english, 2016

32

ParAB Partition Dynamics in Firmicutes: Nucleoid Bound ParA Captures and Tethers ParB-Plasmid Complexes

Lioy, Virginia S., Volante, Andrea, Soberón, Nora E., Lurz, Rudi, Ayora, Silvia, Alonso, Juan C., Rybenkov, Valentin V

Journal:

Year:

2015

Language:

english

File:

PDF, 13.30 MB

english, 2015

33

Mutational analysis of MukE reveals its role in focal subcellular localization of MukBEF

She, Weifeng, Mordukhova, Elena, Zhao, Hang, Petrushenko, Zoya M., Rybenkov, Valentin V.

Journal:

Molecular Microbiology

Year:

2013

Language:

english

File:

PDF, 1.17 MB

english, 2013

34

Identification and Structure-Activity Relationships of Novel Compounds that Potentiate the Activities of Antibiotics in Escherichia coli

Haynes, Keith M., Abdali, Narges, Jhawar, Varsha, Zgurskaya, Helen I., Parks, Jerry M., Green, Adam T., Baudry, Jerome Yves, Rybenkov, Valentin V., Smith, Jeremy C., Walker, John K

Journal:

Journal of Medicinal Chemistry

Year:

2017

Language:

english

File:

PDF, 1.39 MB

english, 2017

35

Synergy between Active Efflux and Outer Membrane Diffusion Defines Rules of Antibiotic Permeation into Gram-Negative Bacteria

Krishnamoorthy, Ganesh, Leus, Inga V., Weeks, Jon W., Wolloscheck, David, Rybenkov, Valentin V., Zgurskaya, Helen I., Bonomo, Robert A.

Journal:

Year:

2017

Language:

english

File:

PDF, 2.18 MB

english, 2017

36

Permeability barriers of Gram-negative pathogens

Zgurskaya, Helen I., Rybenkov, Valentin V.

Journal:

Annals of the New York Academy of Sciences

Year:

2019

Language:

english

File:

PDF, 679 KB

english, 2019

37

Machine Learning Algorithm Identifies an Antibiotic Vocabulary for Permeating Gram-Negative Bacteria

Mansbach, Rachael A., Leus, Inga V., Mehla, Jitender, Lopez, Cesar A., Walker, John K., Rybenkov, Valentin V., Hengartner, Nicolas, Zgurskaya, Helen I., Gnanakaran, S

Journal:

Journal of Chemical Information and Modeling

Year:

2020

File:

PDF, 3.04 MB

2020

38

Simulation of DNA catenanes

Vologodskii, Alexander, Rybenkov, Valentin V.

Journal:

Physical Chemistry Chemical Physics

Year:

2009

Language:

english

File:

PDF, 1.36 MB

english, 2009

39

MukBEF, a Chromosomal Organizer

Rybenkov, Valentin V., Herrera, Viridiana, Petrushenko, Zoya M., Zhao, Hang

Journal:

Journal of Molecular Microbiology and Biotechnology

Year:

2015

Language:

english

File:

PDF, 1.59 MB

english, 2015

40

Mechanics of DNA bridging by bacterial condensin MukBEF in vitro and in singulo

Petrushenko, Zoya M, Cui, Yuanbo, She, Weifeng, Rybenkov, Valentin V

Journal:

The EMBO Journal

Year:

2010

Language:

english

File:

PDF, 1.18 MB

english, 2010

41

Parallel Lipoplex Folding Pathways Revealed Using Magnetic Tweezers

Sun, Zhiqiang, Tikhonova, Elena B., Zgurskaya, Helen I., Rybenkov, Valentin V.

Journal:

Biomacromolecules

Year:

2012

Language:

english

File:

PDF, 1.80 MB

english, 2012

42

Escherichia coli SeqA Structures Relocalize Abruptly upon Termination of Origin Sequestration during Multifork DNA Replication

Fossum-Raunehaug, Solveig, Helgesen, Emily, Stokke, Caroline, Skarstad, Kirsten, Rybenkov, Valentin V.

Journal:

Year:

2014

Language:

english

File:

PDF, 628 KB

english, 2014

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